Universität Wien

300043 PP Script Programming in genome analysis (2020S)

common script languages for the analysis of sequence data

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Prüfungsimmanente Lehrveranstaltung
Moodle

An/Abmeldung

Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").

Details

max. 20 Teilnehmer*innen
Sprache: Englisch

Lehrende

Termine (iCal) - nächster Termin ist mit N markiert

Preliminary discussion on 3.3.2020 at 10:00 in Seminarraum A5.43, UZA Augasse 2-6, 5.Stock Kern A

  • Dienstag 03.03. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 10.03. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 17.03. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 24.03. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 31.03. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 21.04. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 28.04. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 05.05. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 12.05. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 19.05. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 26.05. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 09.06. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 16.06. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 23.06. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A
  • Dienstag 30.06. 10:00 - 13:00 Seminarraum 5.43, UZA Augasse 2-6, 5.Stock Kern A

Information

Ziele, Inhalte und Methode der Lehrveranstaltung

In this practical course, students will learn the most common script languages used in bioinformatics. This will include basic setup of the languages and elementary functions such as data types, assignments, flow control, functions and procedures, debugging. More applied uses like sorting and searching, finding and using existing programming libraries, automating external programmes and web services and parsing results will be used. A notebook is needed (a few can be borrowed in the course)

Art der Leistungskontrolle und erlaubte Hilfsmittel

A large programming project to be handed in afterwards

Mindestanforderungen und Beurteilungsmaßstab

After the course, the students will know principles and techniques for construction of simple programs for solving problems in bioinformatics, using a common scripting programming language. The participants will have practical experience with implementation of text processing and parsing as well as communication with external programs from within a common scripting programming language. The method of work at the course will also train the participants to plan and complete projects.

Prüfungsstoff

The course will be in the form of lectures, followed by non-mandatory individual exercises. A larger applied exercise/project is given at the end of the course and is used for grading

Literatur

Zuordnung im Vorlesungsverzeichnis

BOE 13

Letzte Änderung: Mo 05.10.2020 14:30