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300627 SE Plant Genome Evolution: Repetitive DNA (2013S)
Prüfungsimmanente Lehrveranstaltung
Labels
An/Abmeldung
Hinweis: Ihr Anmeldezeitpunkt innerhalb der Frist hat keine Auswirkungen auf die Platzvergabe (kein "first come, first served").
- Anmeldung von Mo 04.02.2013 08:00 bis Do 21.02.2013 18:00
- Abmeldung bis Do 28.03.2013 18:00
Details
max. 10 Teilnehmer*innen
Sprache: Englisch
Lehrende
Termine (iCal) - nächster Termin ist mit N markiert
- Freitag 08.03. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 15.03. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 22.03. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Donnerstag 11.04. 10:00 - 13:00 Übungsraum 1 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 12.04. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 19.04. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 26.04. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 03.05. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 10.05. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 17.05. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 24.05. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 31.05. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 07.06. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 14.06. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 21.06. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
- Freitag 28.06. 09:00 - 11:00 Übungsraum 2 (Fakultätszentrum für Biodiversität) Rennweg 1.OG
Information
Ziele, Inhalte und Methode der Lehrveranstaltung
This course offers the students the possibility to get acquainted with modern literature and recent views on repetitive DNA (tandemly repeated and dispersed including mobile genetic elements) which constitute large fractions of plant genomes. The selected papers will focus on types of repetitive DNA abundance, variation, hypotheses on their origin, factors stimulating their activity in the genome, mechanisms which enable their successful amplification, existence, and evolution in the genome. Furthermore, their impact on genome restructuring on all levels of organization and evolution will be discussed as well as their role in the genome (selfish junk DNA vs. useful collaborator). Students will be able to understand and appreciate different aspects of evolution and role of repetitive DNA in shaping plant genomes, especially in the forthcoming era of genomics. Special emphasis will be on application of next generation sequencing to analyze repetitive DNA pf complex plant genomes, both diploid and polyploid.
Art der Leistungskontrolle und erlaubte Hilfsmittel
Preparation of published papers for discussions 70%
Active participation in discussions 20%
Written report (summary of prepared papers and discussion) 10%
The deadline for written report is 25.06.2013
Active participation in discussions 20%
Written report (summary of prepared papers and discussion) 10%
The deadline for written report is 25.06.2013
Mindestanforderungen und Beurteilungsmaßstab
To acquire following skills:
1. To be able critically read the literature, to synthesize gained knowledge, ask relevant questions and plan own experiments
2. To be able to analyze, document, and interpret the data in the context of other available published information.
Knowledge outcome:
1. To be able to define different types of repetitive DNA.
2. To be able to define major mechanisms by which the repeats originate, spread and evolve in the genome
3. To be able to define types and processes by which different repeat types participate in plant genome function and define what types of evolutionary changes do they influence in different plant groups (e.g., on the level of genes, chromosomes, and whole genomes)
4. To be able to understand application of next generation sequencing techniques and bioinformatic data analyses of repeats and how these contribute to our understanding of evolution of plant genomes.
1. To be able critically read the literature, to synthesize gained knowledge, ask relevant questions and plan own experiments
2. To be able to analyze, document, and interpret the data in the context of other available published information.
Knowledge outcome:
1. To be able to define different types of repetitive DNA.
2. To be able to define major mechanisms by which the repeats originate, spread and evolve in the genome
3. To be able to define types and processes by which different repeat types participate in plant genome function and define what types of evolutionary changes do they influence in different plant groups (e.g., on the level of genes, chromosomes, and whole genomes)
4. To be able to understand application of next generation sequencing techniques and bioinformatic data analyses of repeats and how these contribute to our understanding of evolution of plant genomes.
Prüfungsstoff
seminar; presentation, discussion, and critical evaluation of scientific papers
Literatur
1. Volff J.-N. (ed.) 2005. Retrotransposable elements and genome evolution. Karger, Basel.
2. Ayala F.J., Fitch W.M., and Clegg M.T. (eds) 2000. Variation and evolution in plants and microorganisms: toward a new synthesis 50 years after Stebbins. National Academy of Sciences of the USA.
3. Puertas M.J. & Naranjo T. (eds.) 2005. Plant cytogenetics. Karger, Basel.
4. Birchler J. & Pires C. (eds.) 2010. Advanced in Plant Cytogenetics. Karger, Basel.
5. "Plant Genome Diversity" vol. 1 and 2, Springer 2013
2. Ayala F.J., Fitch W.M., and Clegg M.T. (eds) 2000. Variation and evolution in plants and microorganisms: toward a new synthesis 50 years after Stebbins. National Academy of Sciences of the USA.
3. Puertas M.J. & Naranjo T. (eds.) 2005. Plant cytogenetics. Karger, Basel.
4. Birchler J. & Pires C. (eds.) 2010. Advanced in Plant Cytogenetics. Karger, Basel.
5. "Plant Genome Diversity" vol. 1 and 2, Springer 2013
Zuordnung im Vorlesungsverzeichnis
MPF W-1, MEV W-6, MGE III-2
Letzte Änderung: Mo 07.09.2020 15:44