Universität Wien
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300048 UE Sequencing bioinformatics for beginners (2024S)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 20 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

  • Tuesday 05.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 19.03. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 09.04. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 16.04. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 23.04. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Thursday 02.05. 09:45 - 11:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Friday 10.05. 09:45 - 11:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 14.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 21.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 28.05. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 04.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 11.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 18.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
  • Tuesday 25.06. 15:00 - 16:30 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1

Information

Aims, contents and method of the course

Practical introduction to basics of bioinformatics with a focus on sequencing data in the context of evolutionary genetics.
How to use the command line? How to work with bash and integrated tools, and using R for analysis and visualization? How to work with big data files, in particular from DNA sequencing? Which file types are used in this context? How to use reference genomes, how to map and filter sequencing data? How to get genotypes, and how to process these?

Assessment and permitted materials

Active contribution. Solving of 4 challenges during the course (with guidance).

Minimum requirements and assessment criteria

Submission of possible solutions for 4 challenges through Moodle. First, the basic understanding of the approach is evaluated, then the correctness of the solution. Each challenge represents 25% of the mark.

Examination topics

Application of bash commands introduced in the course; application of mapping, genotyping & filtering tools.

Reading list

https://doi.org/10.3390%2Fjcm9010132

Association in the course directory

BAN 5

Last modified: We 31.07.2024 12:06