Universität Wien
Warning! The directory is not yet complete and will be amended until the beginning of the term.

300177 VO Structural Bioinformatics II (2016S)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie

Exam schedule (Prof. Carugo's bureau, VBC 5)

July 2, 2015, 9.30

July 23, 2015, 9.30

September 17, 2015, 9.30

October 16, 2015, 13.00
Moodle

Details

Language: English

Examination dates

Lecturers

Classes (iCal) - next class is marked with N

Vorbesprechung: 18.3.2016, 11.00 Uhr, SR/STB, Viennabiocenter 5,1030 Wien.

Included in the teaching program of the PhD program "Integrative Structural Biology", part of the Vienna Doctoral School.

  • Monday 30.05. 10:00 - 16:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Tuesday 31.05. 10:00 - 16:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Wednesday 01.06. 10:00 - 16:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Thursday 02.06. 10:00 - 16:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Friday 03.06. 10:00 - 16:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien

Information

Aims, contents and method of the course

Analysis and prediction of protein structural features. Prediction of secondary structure, solvent exposure, and conformational disorder. Prediction of tertiary structure with ab initio methods, homology modelling techniques, and fold recognition approaches. Prediction of protein-protein interactions and of quaternary structures. Molecular mechanics and energy estimation and minimization. Introduction to molecular dynamics. Introduction to machine learning methods with predictive capabilities (artificial neural networks and support vector machines). Comparison and validation of predictive algorithms. Use of free and online software packages.

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Examination topics

Reading list

Anna Tramontano

Proptein Structure Prediction - Concepts and Applications

Wiley-VCH, Weinheim, 2006

Association in the course directory

MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB

Last modified: We 13.12.2023 00:21