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300217 PUE Exercises in Population Genetics (2016W)
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max. 25 participants
Language: English
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This practical course is taking place with 5ESBO2 UE Population Genetics - Kofler R., Schlötterer C. (University of Veterinary Medicine, Vienna)
Thursdays 13:30-16:00Location :
-- VetMed: Computer room, Institut für Populationsgenetik, Building HA (4th floor), University of Veterinary Medicine, Veterinärpl. 1, Vienna
-- Faculty of Mathematics: Computer room, Faculty of Mathematics, Oskar-Morgenstern-Platz, Vienna6. Oct.: VetMed
13. Oct.: Faculty of Mathematics (PC-room 7, 3rd floor)
20. Oct.: Faculty of Mathematics (PC-room 3, basement)
27. Oct.: Faculty of Mathematics (PC-room 3, basement)
3. Nov.: VetMed
10. Nov.: Faculty of Mathematics (PC-room 3, basement)
17. Nov.: VetMed
24. Nov.: VetMed
1. Dec.: VetMed
15. Dec.: VetMed
12. Jan.: Faculty of Mathematics (PC-room 3, basement)
19. Jan.: VetMed
26. Jan.: Faculty of Mathematics (PC-room 3, basement)
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Reading list
Suggested reading:
Hedrick, Genetics of Populations, Jones and Bartlett
Crawley, Statistics: An Introduction Using R, Wiley
Barrett, Linux Pocket Guide: Essential Commands, Reilly
Paradis, R for beginners (available online from CRAN)
Hedrick, Genetics of Populations, Jones and Bartlett
Crawley, Statistics: An Introduction Using R, Wiley
Barrett, Linux Pocket Guide: Essential Commands, Reilly
Paradis, R for beginners (available online from CRAN)
Association in the course directory
MES 1
Last modified: Mo 07.09.2020 15:43
Introduction to R and R graphics (ggplot2), Wright Fisher simulations, Coalescent simulations, application of neutrality tests, basic handling of NGS data, simulations of quantitative traitsPre-requisites: basic knowledge of R and of the UNIX command lineGoals:
Students are familiar with the R programming language and commonly used tools in population genetics (MS, PAML, alignment tools). The students are able to simulate neutral and selective processes in populations. They can apply widely used neutrality tests to genome scale data.