300224 PP Genome analysis of prokaryotes (2014S)
Applied bioinformatics for the analysis of a genome sequence
Continuous assessment of course work
Labels
First meeting on Tue, Jun 3rd, 2014, 3pm in seminar room 2.257, UZA I (http://cube.univie.ac.at/contact/). Participation in this first meeting is mandatory for all participants.Practical work from Jun 30 to Jul 11, 2014, 9am-5pm in Seminar room 2D404, UZA 2, Althanstr. 14.
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from We 05.02.2014 08:00 to Th 20.02.2014 18:00
- Deregistration possible until Fr 28.03.2014 18:00
Details
max. 20 participants
Language: German, English
Lecturers
Classes
Currently no class schedule is known.
Information
Aims, contents and method of the course
In this practical course the participants acquire the knowledge and expertise to annotate and analyze prokaryotic genome sequences. This includes gene prediction, prediction of protein functions and structures and comparative genome analyses. The analysis of complete, yet unpublished genome sequences in this practical course allows us to address recent scientific questions in microbiology and microbial ecology using genomic methodologies. Basic knowledge in Bioinformatics and Genomics (as e.g. teached in lecture 300311) are required.
Assessment and permitted materials
Written report in the format of a publication.
Minimum requirements and assessment criteria
Understanding and application of important computational methods for the analysis of genome sequences; automatic large-scale application of programs using small, self-written scripts; interpretation of the results of computational analyses with regard to the corresponding organism.
Examination topics
Diverse computational methods for genome analysis, programming language Perl.
Work in small work groups (each group analyzes another genome sequence).
Work in small work groups (each group analyzes another genome sequence).
Reading list
Provided throughout the seminar.
Association in the course directory
B-BOE 12, B-BOE 13, B-BMB 11B, B-BMG 12B
Last modified: Mo 07.09.2020 15:43