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300362 UE Applied Data Analysis (2024S)
Continuous assessment of course work
Labels
Registration/Deregistration
Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).
- Registration is open from Th 08.02.2024 14:00 to Th 22.02.2024 18:00
- Deregistration possible until Fr 15.03.2024 18:00
Details
max. 15 participants
Language: English
Lecturers
- Oleg Simakov
- Georgios Efthymiadis (Student Tutor)
Classes (iCal) - next class is marked with N
Initial meeting on March 18th at 3pm at UBB (SR1.3).
- Monday 18.03. 15:00 - 16:30 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1 (Kickoff Class)
- Monday 22.04. 08:00 - 18:15 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
- Wednesday 24.04. 08:00 - 18:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Thursday 25.04. 08:00 - 18:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Monday 29.04. 08:00 - 18:15 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
- Tuesday 30.04. 08:00 - 18:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Friday 03.05. 08:00 - 18:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Monday 06.05. 08:00 - 18:15 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
- Tuesday 07.05. 08:00 - 18:15 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Monday 13.05. 08:00 - 18:15 Seminarraum 1.3, Biologie Djerassiplatz 1, 1.005, Ebene 1
- Tuesday 14.05. 08:00 - 13:00 Seminarraum 1.8, Biologie Djerassiplatz 1, 1.007, Ebene 1
- Tuesday 14.05. 13:15 - 18:15 Seminarraum 1.2, Biologie Djerassiplatz 1, 1.004, Ebene 1
Information
Aims, contents and method of the course
In this course we will learn about modern high-throughput methodologies and get hands-on experience with new methods and real data. We will discuss sequencing technology, experiment design, quality control, assembly, read mapping and counting, differential expression analysis, expression profiles and principal components analysis.
Assessment and permitted materials
Exercises will be done throughout the course as a part of a collective analysis.
Minimum requirements and assessment criteria
There are 10 days of the course. Presence on at least 8 days is required. The grade will be based on course participation (20%) and the final report in a form of a scientific paper outlining the aims and analyses completed during the course, as well as potential future directions (80%).
Students are recommended but not required to take 300353 UE Applied programming for Bioinformatics, or have a basic grounding in Unix and BASH shell scripting.
Students are recommended but not required to take 300353 UE Applied programming for Bioinformatics, or have a basic grounding in Unix and BASH shell scripting.
Examination topics
A final report describing the methods used as well as an analysis of the data will be required after completion of the course. Attendance and participation are also graded.
Reading list
Association in the course directory
MES6, MMEI III, MGE III-2, MMB W-2, MMB W-3, M-WZB, MMB IV., MNEU V.
Last modified: We 31.07.2024 12:06