Universität Wien
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300416 UE 3-D Imaging and Modeling Using MicroCT (2022W)

10.00 ECTS (6.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
ON-SITE
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 12 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

The first class meeting on Thursday, 6 October will be in person if covid restrictions allow. In any case, some class meetings may be online through Moodle.

  • Thursday 06.10. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 13.10. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 20.10. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 27.10. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 03.11. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 10.11. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 17.11. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 24.11. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 01.12. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 15.12. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 12.01. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 19.01. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1
  • Thursday 26.01. 11:30 - 13:00 Seminarraum 1.5, Biologie Djerassiplatz 1, 1.012, Ebene 1

Information

Aims, contents and method of the course

Students will learn methods for image analysis using ImageJ, Amira, or other software as needed; carry out projects using x-ray microtomographic (microCT) or other 3D images of biological samples; and write a research report in the format of a scientific paper. Students may bring their own projects or work on an assigned project. Techniques can include applications of image processing and analysis software to 2D and 3D images, 3D image reconstruction and visualisation, and image measurement and analysis. Projects can be on organismal morphology (comparative, developmental, evolutionary), functional or structural analysis/modeling, image computing or informatics, or other topics according to student interests.
This course time is not blocked, so the project work can be carried out according each student's own schedule.
Course website: http://imagingclasses.blogspot.co.at/

Assessment and permitted materials

Based on participation (30%), project content and presentation (30%), and final report (40%).

Minimum requirements and assessment criteria

Students will carry out a small research project and present their results, while learning techniques and applications of 3D microscopic imaging.

Examination topics

In-class discussions, independent reading, and small-group work with instructors.

Reading list

Literature specific to each project will be chosen by the instructors and students during development of the projects.

Association in the course directory

BZO 12, MZO 2, MZO2

Last modified: Mo 23.01.2023 14:09