Universität Wien
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301060 UE Bioinformatics for microbial omics (2024W)

Computational genomics, pangenomics, metagenomics and multi-omics analysis

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
Moodle

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 24 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

  • Monday 07.10. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 14.10. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 21.10. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 28.10. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 04.11. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 11.11. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 18.11. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 25.11. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 02.12. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 09.12. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 16.12. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 13.01. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 20.01. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1
  • Monday 27.01. 13:15 - 14:45 Seminarraum 1.4, Biologie Djerassiplatz 1, 1.013, Ebene 1

Information

Aims, contents and method of the course

This practical seminar introduces the major computational methods necessary to process, analyse and interpret shotgun metagenomic sequences in theory and practice. Main topics are metagenome assembly, binning, taxonomic characterization, and annotation. Students simulate individual metagenomes first, and test the relevant computational approaches on them. Based on this experience, real metagenomes from recent research projects are analyzed in the second part of the seminar.

Assessment and permitted materials

Paper presentation; oral progress reports; written work report.

Evaluation scale of submitted exercise solutions:
<50%: 5
<62.5%: 4
<75%: 3
<87.5%: 2
>=87.5%: 1

Minimum requirements and assessment criteria

Basic knowledge in Bioinformatics and Genomics (as e.g. teached in lecture 300311) are required for participation in this seminar.

Examination topics

This practical seminar will consist of theoretical (lecture like) introductions to the topics, discussion of selected scientific papers and practical exercises in the computer room.

Reading list

Will be provided during the seminar.

Association in the course directory

MMB II., MMEI II-1.2, MMEI II-2.2, WZB, MNEU IV.

Last modified: Fr 02.08.2024 11:53