Universität Wien
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301185 VO Structural Bioinformatics I (2018W)

3.00 ECTS (2.00 SWS), SPL 30 - Biologie
Moodle

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Details

Language: English

Examination dates

Lecturers

Classes (iCal) - next class is marked with N

Preliminary meeting: 11am,October the 5, 2018 in the Seminar Room of the Dept. Structural and Computational Biology.

Lectures in the EDV Room of the Dept. Structural and Computational Biology:

Monday, January 14, 2019: 10-12 and 13-17
Tuesday, January 15, 2019: 10-12 and 13-17
Wednesday, January 16, 2019: 10-12 and 13-17
Thursday, January 17, 2019: 10-12 and 13-17
Friday, January 18, 2019: 10-12 and 13-17

Exams in my office at the Dept. Structural and Computational Biology (always at 9.30):

Friday, February 15, 2019
Friday, March 8, 2019
Friday, April 12, 2019
Friday, May 24, 2019

  • Monday 14.01. 13:00 - 17:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Tuesday 15.01. 13:00 - 17:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Wednesday 16.01. 13:00 - 17:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Thursday 17.01. 13:00 - 17:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien
  • Friday 18.01. 13:00 - 17:00 CCR03-Raum 1.113 Campus Vienna Biocenter, 1030 Wien

Information

Aims, contents and method of the course

Programme Introduction to the molecular graphics and analysis of the most common protein folds with RasMol, Pymol and Chimera. Measurements of structural similarity between proteins, theory and applications (Dalilite, CE, PDBeFold and other tools). Databases of macromolecular structures: the Protein Data Bank, the wwPDB and the ePDB. Databases of structural domains: CATH, SCOP, and SCOP2. Databases of protein domains: Pfam, InterPro, InterProScan. Databases of computational models: ModBase and BioModels. Validation of experimental macromolecular structures. The problem of data redundancy.

Assessment and permitted materials

Written exam

Minimum requirements and assessment criteria

Examination topics

Reading list

Association in the course directory

MMB II-2, MMB W-2, MGE III-2, MMEI III, M-WZB, PhD MB 1,UF MA BU 01, UF MA BU 04

Last modified: We 13.12.2023 00:22