Universität Wien
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301236 UE Exercises in Computational Structural Biology (2025S)

DK Integrative Structural Biology

5.00 ECTS (3.00 SWS), SPL 30 - Biologie
Continuous assessment of course work
Th 06.03. 13:00-14:00 STB/Hörsaal B Campus Vienna Biocenter 5, 1030 Wien

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 30 participants
Language: English

Lecturers

Classes (iCal) - next class is marked with N

Vorbesprechung: 06.03.25, 13.00, HS B, VBC5, Campus Vienna Biocenter 5, 1030 Vienna

Exercises: 17.3.25- 28.3.25, 12.00 - 17.00, Computer rooms 1&2 (6.505 - 6.506), Max Perutz Labs, Dr. Bohrgasse 9, 1030 Vienna

  • Monday 17.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Tuesday 18.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Wednesday 19.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Thursday 20.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Thursday 20.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Friday 21.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Friday 21.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Monday 24.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Monday 24.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Tuesday 25.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Tuesday 25.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Wednesday 26.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Wednesday 26.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Thursday 27.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Thursday 27.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Friday 28.03. 09:00 - 12:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien
  • Friday 28.03. 12:00 - 17:00 BZB EDV-Raum CCR01, 6.Ebene 6.505, Dr.-Bohr-Gasse 9, 1030 Wien

Information

Aims, contents and method of the course

Building upon the theoretical lectures in the course Computational Structural Biology (301232-1 VO), the present course will introduce students to the practice of setting up, running and analyzing molecular dynamics simulations of biomolecules using the program suite GROMACS. This practical course complements the theoretical lectures given in 301232-1 VO Computergestuetzte Strukturelle Biologie. Students are required to have completed this or a similar course, or take 301232-1 concurrently.

Assessment and permitted materials

Presentation of the final practical project (50% of the grade); written report from the practicals (50% of the grade).

Minimum requirements and assessment criteria

a. Minimum requirements: at least 50% success; b.Assessment criteria: Performance on the oral exam - 1 (excellent)|90-100%|2 (good): 75-89.99%|3 (satisfactory): 60-74.99%|4 (sufficient): 50-59.99%|5 (insufficient): 0-49.99%

Examination topics

Contents of practical exercises and their theoretical background.

Reading list

Dan Frenkel and Berend Smit: Understanding Molecular Simulation, ISBN ISBN: 9780122673511; Andrew Leach: Molecular Modeling, ISBN-13: 978-0582382107.

Association in the course directory

MMB III-1a., MMEI III

Last modified: Fr 17.01.2025 15:06