Universität Wien
Warning! The directory is not yet complete and will be amended until the beginning of the term.

530029 SE Chemoinformatics for Lipidomics (2023W)

2.00 ECTS (1.00 SWS), SPL 53 - Doktoratsstudium Chemie
Continuous assessment of course work

Registration/Deregistration

Note: The time of your registration within the registration period has no effect on the allocation of places (no first come, first served).

Details

max. 15 participants
Language: German

Lecturers

Classes (iCal) - next class is marked with N

First Meeting on Friday, December 1st 2023, 15:00-16:30 via Zoom.

Main language: English

  • Monday 08.01. 14:00 - 15:30 Seminarraum 1 Analytische Chemie 2.OG Boltzmanngasse 1
  • Tuesday 09.01. 15:00 - 16:30 Kleiner Hörsaal 3 Chemie Boltzmanngasse 1 HP
  • Wednesday 10.01. 10:00 - 11:30 Seminarraum 1 Analytische Chemie 2.OG Boltzmanngasse 1
  • Thursday 11.01. 14:00 - 15:30 Seminarraum 1 Analytische Chemie 2.OG Boltzmanngasse 1
  • Friday 12.01. 14:00 - 15:30 Seminarraum 1 Analytische Chemie 2.OG Boltzmanngasse 1
  • Thursday 25.01. 14:00 - 15:30 Seminarraum 3 Organische Chemie 1OG Boltzmanngasse 1
  • Friday 26.01. 14:00 - 15:30 Seminarraum 1 Analytische Chemie 2.OG Boltzmanngasse 1

Information

Aims, contents and method of the course

Objectives: In this course, students will learn about, present and discuss various relevant chemo & bioinformatics methods from current literature related to lipidomics.

Contents:
The following topics(areas) will be presented or worked on together: Lipid structure generation, nomenclature, lipid identification in mass spectra (rule-based methods, machine learning), in-silico generation of mass spectra from lipids, normalization methods for absolute quantification, visualization approaches for lipidomics data, multiomics data integration, critical examination and scientific discussion of research results.

Method:
Course content will be developed through lectures, discussions, oral presentations, and a final protocol. The presentation includes a lecture with presentation slides (30 min) followed by a discussion (20 min). Current publications from the scientific literature with chemo- or bioinformatics focus and relation to lipidomics will be discussed by students of the study program Chemistry with focus on Analytical Chemistry, as well as with participants of related disciplines. The discussion will take place together with all participants.

Assessment and permitted materials

- Active cooperation and participation in the discussions - oral presentation of a chosen topic / a publication in the context of the seminar - answering questions in the context of the discussion about your own presentation - timely submission of a topic-specific protocol. To ensure good scientific practice, the course director may invite students to a grade-relevant discussion after presentation and protocol submission, which must be completed positively.

Minimum requirements and assessment criteria

Minimum Requirements: Attendance at the first unit of the seminar (preliminary meeting date) is mandatory. Attendance must be 75% overall, which is equivalent to 2 excused absences. Grades will be awarded according to the following point scheme: - 1 (very good): 100 - 91 points - 2 (good): 89 - 81 points - 3 (satisfactory): 80 - 71 points - 4 (sufficient): 70 - 61 points - 5 (insufficient): 60 - 0 points More than 60% of the maximum possible number of points must be achieved to obtain a passing grade. Each sub-performance must be completed at the end of the course.

Examination topics

Assessment standard: 100 points can be obtained for this course. These are divided into: - Collaboration: 30 points - Oral presentation and questions: 40 points - Protocol on the topic: 30 points

Reading list

Um die obigen Lernziele zu erreichen, wird unterstützend Literatur zur Verfügung gestellt. Die Vorstellung und Aufteilung der Themen und zugehöriger Literatur erfolgt im Vorbesprechungstermin.

Association in the course directory

Doktorat, Freie Wahlfächer und Transferable Skills, BC-Wahl, CH-FE, EF1-3

Last modified: Fr 24.11.2023 15:08